Yes, that sort of what I was asking.
Let me elaborate, I own gotek drives but have only ever used them on my Amiga's, using them on a x86 system is something I've not yet done, so it's outside my wheel house of experience. I'm not clear on what I need to do to get a gotek working on a different system. What I know about the CP II is that it expects a 5.25" 360kb drive to be there as default. If I can somehow find someone to send me a setup disk, yes I could configure the computer to use a 1.44mb 3.5" floppy drive. But should the battery go flat, it will default back to the stock settings and I'll be taking it apart again and setting things back up. So really what I'm looking to find out, is if said Gotek is flashed with the appropriate software, can you hook one up and use it out the box without reconfiguring the computer? Will the CP II see the Gotek as a stock 360kb floppy drive? From what I've read on here, my understanding is, you don't need to adjust any pins, you simple pop a 360kb image on a usb pen and the gotek will imitate a 360kb drive.
What I had in mind was if possible, finding a slim half height 3D printed gotek facia for the CP II and swapping the drive out.