As you said the signals were going through the resistors, I'm guessing that they may have been installed as series termination to attenuate reflections on the parallel port lines. I've done a similar same thing with that goal in mind, albeit on the device end, in a ProFile emulator, and not by hacking up a Lisa motherboard.
Pin 13 is data bit 7, the highest-order bit (counting up from 0). I have no idea why you would ever want to cut it.
Maybe this Lisa was sending signals down a long parallel cable, and whatever equipment receiving it couldn't handle 8-bit bytes? It's pretty odd.